PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ORGLA04G0098400.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family bHLH
Protein Properties Length: 354aa    MW: 37315.9 Da    PI: 4.3487
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ORGLA04G0098400.1genomeAGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH14.18.9e-051361533855
                        STCHHHHHHHHHHHHHHH CS
                HLH  38 lsKaeiLekAveYIksLq 55 
                         +Ka+i+e +++YIk+Lq
  ORGLA04G0098400.1 136 TDKATIVEATINYIKNLQ 153
                        89***************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.280.107.9E-6134166IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 354 aa     Download sequence    Send to blast
MSQEGPNNHP QGTQETHDCP FTIATNTPLG STKMGYSDSR KSDENNTSSK PASPVVSSDV  60
VEIKETWENV VVADEEGEGG EDGFASDASE SKSKSSSDEV DYELLDLLAG AREGCSGGNN  120
NDEVKNFAYA DHKMHTDKAT IVEATINYIK NLQDKIHKME MLKVEREHAI ALAAAATAAT  180
ATATAAASAD TALQAPPPPS EEENEEEHDS VVAAATREMA LADMVHAWEQ QQEAAATGGS  240
HGGHAVPPPP PPAASLQTWT GPNMTASLTG DDGFITLSLP HQGGQKNLVA GAVSVLERHH  300
IDVVTATVSA SEQGDNLISL HCHLSPGSSS SQNLTPLDKF KLAMSELMLW VISV
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1072680.0AK107268.1 Oryza sativa Japonica Group cDNA clone:002-125-H08, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015635110.11e-114PREDICTED: transcription factor bHLH95
TrEMBLI1PLB50.0I1PLB5_ORYGL; Uncharacterized protein
STRINGORGLA04G0098400.10.0(Oryza glaberrima)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP20053691